Cell Bin-Protein

Analytical Report
A02677B5_DAPI_Demo_Realign
Alerts
Metrics
Value
Alert
Note

- Summary
  Gene Protein
- Square Bin
  Gene Protein
- Cell Bin
  Gene Protein
- Image
- Analysis

Cell Bin Statistics

###### Cell Count

Number of cells

###### Mean/Median Cell Area

Mean/Median cell area (pixel)

###### Mean/Median MID

Mean/Median MID count per cell
Cell Count
208,348
Mean Cell Area
193
Median Cell Area
176
Mean MID
601
Median MID
540
Cell Bin
Violin plots show the distribution of deduplicated MID count and cell area in each bin
Clustering
(left) Clustering spots (cell bin) under tissue covered region with the Leiden algorithm
(right) UMAP projections of spots (cell bin) colored by automated clustering. Spots in the short distance are assigned with the same color have similar gene expression profile.
Tissue Plot with Spots (cellbin)
UMAP Projection of Spots (cellbin)